DiGGer design generator under correlation and blocking


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Documentation for package ‘DiGGer’ version 1.0.5

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A B C D E F G I N O P R S T

DiGGer-package DiGGer experimental design generator.

-- A --

addBlock Add a block to an objective in a DiGGer object.
addBlock.DiGGer Add a block to an objective in a DiGGer object.
addBlock.Objective Add a block to an objective in a DiGGer object.
addBlock.Phase Add a block to an objective in a DiGGer object.
addObjective Add an Objective to a DiGGer search.
addObjective.DiGGer Add an Objective to a DiGGer search.
addObjective.Phase Add an Objective to a DiGGer search.
addPhase Add a Phase object to a DiGGer search.
addPhase.DiGGer Add a Phase object to a DiGGer search.

-- B --

Block DiGGer Block object constructor.

-- C --

corDiGGer Function for a spatially adjusted incomplete block DiGGer design search.
Correlation DiGGer Correlation object constructor.
createFactorialDF Create a factorial treatment data frame.

-- D --

deleteBlock Delete a Block from an objective in a DiGGer search
deleteBlock.DiGGer Delete a Block from an objective in a DiGGer search
deleteBlock.Objective Delete a Block from an objective in a DiGGer search
deleteBlock.Phase Delete a Block from an objective in a DiGGer search
deleteObjective Delete an Objective from a DiGGer search
deleteObjective.DiGGer Delete an Objective from a DiGGer search
deleteObjective.Phase Delete an Objective from a DiGGer search
deletePhase Delete a Phase from a Digger search.
deletePhase.DiGGer Delete a Phase from a Digger search.
des.embedopr01 Function to generate an embedded p-rep design
desPlot Plot a design as a matrix
desTab Tabulate replication levels of treatments in blocks.
DiGGer Constructor function for a DiGGer design.

-- E --

errcodes DiGGer error message texts.

-- F --

facDiGGer Function to generate a DiGGer search for a factorial design
findblks Generate block codes.

-- G --

getAType Get the A-efficiency code in a DiGGer search phase
getAType.DiGGer Get the A-efficiency code in a DiGGer search phase
getAType.Phase Get the A-efficiency code in a DiGGer search phase
getBlock Get a Block object from a DiGGer search object.
getBlock.DiGGer Get a Block object from a DiGGer search object.
getBlock.Objective Get a Block object from a DiGGer search object.
getBlock.Phase Get a Block object from a DiGGer search object.
getConcurrence Get a Treatment-Block or Block-Treatment concurrence table summary.
getConcurrence.DiGGer Get a Treatment-Block or Block-Treatment concurrence table summary.
getCorrelation Get a Correlation object from a DiGGer search.
getCorrelation.DiGGer Get a Correlation object from a DiGGer search.
getCorrelation.Objective Get a Correlation object from a DiGGer search.
getCorrelation.Phase Get a Correlation object from a DiGGer search.
getCorrelationBlock Show the dimensions of a correlation block in a DiGGer search.
getCorrelationBlock.DiGGer Show the dimensions of a correlation block in a DiGGer search.
getCorrelationBlock.Phase Show the dimensions of a correlation block in a DiGGer search.
getDesign Get the matrix of design numbers from a DiGGer search.
getDesign.DiGGer Get the matrix of design numbers from a DiGGer search.
getDesignLayout Get the layout dimensions of a DiGGer design.
getDesignLayout.DiGGer Get the layout dimensions of a DiGGer design.
getDups Get the vector of duplicated treatments.
getError Get an error message from a DiGGer object.
getError.DiGGer Get an error message from a DiGGer object.
getidsgn Generate an initial design for a DiGGer search.
getInitialDesign Get the initial design used in a DiGGer search.
getInitialDesign.DiGGer Get the initial design used in a DiGGer search.
getIntermediateDesign Get the design from a DiGGer search phase.
getIntermediateDesign.DiGGer Get the design from a DiGGer search phase.
getLinearCovariate Get the linear covariate from a DiGGer objective.
getLinearCovariate.DiGGer Get the linear covariate from a DiGGer objective.
getLinearCovariate.Objective Get the linear covariate from a DiGGer objective.
getLinearCovariate.Phase Get the linear covariate from a DiGGer objective.
getMaxInterchanges Get the maximum treatment interchanges for a DiGGer search phase.
getMaxInterchanges.DiGGer Get the maximum treatment interchanges for a DiGGer search phase.
getMaxInterchanges.Phase Get the maximum treatment interchanges for a DiGGer search phase.
getNumberOfBlocks Get the number of block factors in a DiGGer objective
getNumberOfBlocks.DiGGer Get the number of block factors in a DiGGer objective
getNumberOfBlocks.Objective Get the number of block factors in a DiGGer objective
getNumberOfBlocks.Phase Get the number of block factors in a DiGGer objective
getNumberOfObjectives Get the number of objectives in a DiGGer search phase.
getNumberOfObjectives.DiGGer Get the number of objectives in a DiGGer search phase.
getNumberOfObjectives.Phase Get the number of objectives in a DiGGer search phase.
getNumberOfSearchPhases Get the number of search phases in a DiGGer search.
getNumberOfSearchPhases.DiGGer Get the number of search phases in a DiGGer search.
getNumberOfTreatments Get the number of treatments in a DiGGer search.
getNumberOfTreatments.DiGGer Get the number of treatments in a DiGGer search.
getObjective Get an objective from a DiGGer search.
getObjective.DiGGer Get an objective from a DiGGer search.
getObjective.Phase Get an objective from a DiGGer search.
getObjectiveWeight Get the weight used for a DiGGer objective.
getObjectiveWeight.DiGGer Get the weight used for a DiGGer objective.
getObjectiveWeight.Objective Get the weight used for a DiGGer objective.
getObjectiveWeight.Phase Get the weight used for a DiGGer objective.
getPhase Get a Phase object from a DiGGer search.
getPhase.DiGGer Get a Phase object from a DiGGer search.
getReplicateLayout Get the dimensions of a DiGGer replicate.
getReplicateLayout.DiGGer Get the dimensions of a DiGGer replicate.
getSearchIntensity Get the search intensity in a DiGGer search phase.
getSearchIntensity.DiGGer Get the search intensity in a DiGGer search phase.
getSearchIntensity.Phase Get the search intensity in a DiGGer search phase.
getSeeds Get the initial Random Number Generator seeds.
getSeeds.DiGGer Get the initial Random Number Generator seeds.
getSwapBlock Get swap block dimensions in a DiGGer search phase.
getSwapBlock.DiGGer Get swap block dimensions in a DiGGer search phase.
getSwapBlock.Phase Get swap block dimensions in a DiGGer search phase.
getTargetAValue Get the target A-measure for a DiGGer search phase.
getTargetAValue.DiGGer Get the target A-measure for a DiGGer search phase.
getTargetAValue.Phase Get the target A-measure for a DiGGer search phase.
getTreatmentVarianceRatio Get the treatment variance ratio from a DiGGer search.
getTreatmentVarianceRatio.DiGGer Get the treatment variance ratio from a DiGGer search.

-- I --

ibDiGGer Function to search for incomplete block designs using DiGGer.
indi Form an indicator matrix.

-- N --

nurseryDiGGer Function to generate a DiGGer search replicated design with high check treatment frequencies

-- O --

Objective Constructor function for a DiGGer Objective.

-- P --

Phase DiGGer Phase object constructor function.
plot Plot DiGGer design labels.
plot.DiGGer Plot DiGGer design labels.
ppage View an object using page.
prDiGGer Function to generate a DiGGer search for a p-rep design
print.Block Print a Block object.
print.Correlation Print a DiGGer Correlation object.
print.DiGGer Print a DiGGer search object.
print.Objective Print a DiGGer Objective
print.Phase Print a DiGGer Phase.
printDiGGer Print a DiGGer input file.
printDiGGer.DiGGer Print a DiGGer input file.

-- R --

r2dDiGGer Function for strict two dimensional replicates from a DiGGer design search.
rcDiGGer Function to search for a row-column design using DiGGer.
run Run a DiGGer search.
run.DiGGer Run a DiGGer search.

-- S --

setAType Set the type of A-Measure for a DiGGer search phase.
setAType.DiGGer Set the type of A-Measure for a DiGGer search phase.
setAType.Phase Set the type of A-Measure for a DiGGer search phase.
setBlock Modify the parameters for a Block object.
setBlock.DiGGer Modify the parameters for a Block object.
setBlock.Objective Modify the parameters for a Block object.
setBlock.Phase Modify the parameters for a Block object.
setCorrelation Modify a Correlation object in a DiGGer search.
setCorrelation.DiGGer Modify a Correlation object in a DiGGer search.
setCorrelation.Objective Modify a Correlation object in a DiGGer search.
setCorrelation.Phase Modify a Correlation object in a DiGGer search.
setCorrelationBlock Set the template for blocks of correlated error.
setCorrelationBlock.DiGGer Set the template for blocks of correlated error.
setCorrelationBlock.Phase Set the template for blocks of correlated error.
setInitialDesign Set an Initial Design for a DiGGer search.
setInitialDesign.DiGGer Set an Initial Design for a DiGGer search.
setLinearCovariate Set the Linear Covariate in a DiGGer search objective.
setLinearCovariate.DiGGer Set the Linear Covariate in a DiGGer search objective.
setLinearCovariate.Objective Set the Linear Covariate in a DiGGer search objective.
setLinearCovariate.Phase Set the Linear Covariate in a DiGGer search objective.
setMaxInterchanges Set the maximum number of treatment interchanges in a DiGGer search Phase.
setMaxInterchanges.DiGGer Set the maximum number of treatment interchanges in a DiGGer search Phase.
setMaxInterchanges.Phase Set the maximum number of treatment interchanges in a DiGGer search Phase.
setObjective Set an Objective to optimise in a DiGGer search
setObjective.DiGGer Set an Objective to optimise in a DiGGer search
setObjective.Phase Set an Objective to optimise in a DiGGer search
setObjectiveWeight Set the scaling weight for a DiGGer Objective.
setObjectiveWeight.DiGGer Set the scaling weight for a DiGGer Objective.
setObjectiveWeight.Objective Set the scaling weight for a DiGGer Objective.
setObjectiveWeight.Phase Set the scaling weight for a DiGGer Objective.
setPhase Modify a DiGGer search Phase.
setPhase.DiGGer Modify a DiGGer search Phase.
setSearchIntensity Set the Search Intensity for a DiGGer search phase.
setSearchIntensity.DiGGer Set the Search Intensity for a DiGGer search phase.
setSearchIntensity.Phase Set the Search Intensity for a DiGGer search phase.
setSeeds Set the Random Number Generator Seeds for a DiGGer search.
setSeeds.DiGGer Set the Random Number Generator Seeds for a DiGGer search.
setSwapBlock Set the template for the swap blocks in a DiGGer search Phase.
setSwapBlock.DiGGer Set the template for the swap blocks in a DiGGer search Phase.
setSwapBlock.Phase Set the template for the swap blocks in a DiGGer search Phase.
setTargetAValue Set the target A-value.
setTargetAValue.DiGGer Set the target A-value.
setTargetAValue.Phase Set the target A-value.
setTreatmentVarianceRatio Set the treatment variance ratio.
setTreatmentVarianceRatio.DiGGer Set the treatment variance ratio.
summary Summarise the DiGGer search.
summary.DiGGer Summarise the DiGGer search.

-- T --

ttab Produce a table of frequencies in an object.